Welcome to GPVD
The giant panda (Ailuropoda melanoleuca) is an iconic endangered species that has attracted considerable interest from the public and scientists. Extensive breeding programs have successfully been conducted in Sichuan Province of China.
GPVD (giant panda variant database) is intended to detect deleterious mutations and their frequency in the giant panda genome, avoid the introduction of serious deleterious mutations into small populations, and provide important basic data for the in-depth study of disease prediction and other abnormal phenomena in captive populations, laying the foundation for the genetic health protection of giant pandas.
Sample screen for variantion in individual and choose for genetic rescue;
Gene search and browse the functional annotation of genes;
Variants search and browse SNPs and Indels for each catagory;
Visualization select variantions and individuals for genotype plot and genome browser;
Select signal find sweep between Qinling and Sichuan populations;
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Warning: At present, only a part of the whole data are presented, and all data will be made public after acceptance of the paper!
Sequencing sources in GPVD
Sample Sources
(55) new sequencing individuals from China Conservation and Research Center for the Giant Panda and Chengdu Research Base of Giant Panda Breeding
(24) Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda Science bulletin 2021, 66(19), 2002-2013
Structure
Gender composition
38 male, 41 female
SC_WLP Sichuan Wild from Large Population
SC_WSP Sichuan Wild from Small Population
SC_QLA Sichuan Qionglai Mountain (Wild)
SC_MSH Sichuan Minshan Mountain (Wild)
SC_XXL Sichuan Xiaoxiangling (Wild)
SC_CAP Sichuan Captive Breeding
QLI Qinling
MIX_CAP Hybrid Breeding
Neighbor-joining Tree
Principal Component Analysis
ADMIXTURE Population Structure